Institute of Biological Sciences, Faculty of Science,1 Department of Microbiology, Faculty of Medicine, University of Malaya,3 Department of Biochemistry and Microbiology, Faculty of Science and Environmental Studies, University Putra Malaysia, Kuala Lumpur, Malaysia,2 Australian Animal Health Laboratory, CSIRO Livestock Industries, Geelong, Victoria, Australia,4 Research Policy and Cooperation, World Health Organization, Geneva, Switzerland5
Received 18 April 2003/ Returned for modification 26 June 2003/ Accepted 29 July 2003
| ABSTRACT |
|---|
|
|
|---|
| INTRODUCTION |
|---|
|
|
|---|
Phage display technology represents an important advance in the capability to rapidly identify antigenic epitopes of pathogenic microorganisms (2-6, 16, 18, 24, 25). With this approach, peptide or protein is expressed as a fusion entity with a coat protein of bacteriophages, resulting in display of the fusion polypeptide on the surface of the virion, while the DNA encoding the fusion polypeptide resides within the virion. Phages displaying peptides are then allowed to interact with antibodies immobilized on a solid support, and the binding phages are then eluted and can be specifically enriched by several cycles of affinity selection. The identity of the fusion peptide can then be determined by sequencing the inserts present in the genome of the recombinant phage (13, 20, 21).
Carbohydrate antigens are immune targets associated with a variety of infectious pathogens (10, 11). One of the problems in developing carbohydrate-based therapeutics is the difficulty involved in synthesizing complex carbohydrate ligands. A possible alternative to the use of carbohydrate would be the development of protein or peptide mimics that could serve the same function. With the development of large random peptide libraries displayed on the surface of filamentous phage (18), it became possible to identify small peptides that could mimic a carbohydrate structure. Although it is not intrinsically obvious that peptides can mimic nonpeptide structures, there are naturally occurring compounds that do so. For example, the protein tendamistat (Hoe-467) binds to the enzyme
-amylase, with the tripeptide WRY occupying the carbohydrate-binding site of the enzyme (22). There have been many successful examples of identification of peptide mimotopes of carbohydrates from phage display peptide libraries (1, 7, 9, 14, 19, 26).
In this paper, we describe the isolation of peptide mimotopes of complex carbohydrates in Salmonella enterica serovar Typhi that react with both carbohydrate-specific monoclonal antibody (MAb) and polyclonal antibody (PAb)-containing sera from typhoid patients. To our knowledge, this is the first demonstration of Vi polysaccharide mimotope identification using pooled sera from patients with a confirmed diagnosis of typhoid fever.
| MATERIALS AND METHODS |
|---|
|
|
|---|
(lacZ)M15 proA+ B+ zzf::Tn10 (Tetr)/fhuA2 supE thi
(lac-proAB)
(hsdMS-mcrB)5(rk- mk- McrBC-)] was obtained from New England Biolabs. Mouse immunoglobulin G (IgG), and goat anti-mouse IgG horseradish peroxidase (HRP) conjugate were purchased from Sigma Chemical Co. HRP-conjugated anti-M13 MAb was purchased from Amersham Pharmacia Biotech, Little Chalfont, United Kingdom. All the inorganic chemicals and organic solvents used were of molecular biology grade. Antibodies. The PAbs used in this study were pooled typhoid patient sera (PTS [sera from 10 individual patients with confirmed typhoid fever]). Medical diagnosis of these patients was confirmed by high antibody titers (>1:640) for one or both O and H antigens, as determined by Widal test. The anti-Vi MAb ATVi was a kind gift from Suttipant Sarasombath, Department of Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand. Production of MAb ATVi from a hybridoma cell line was conducted as described by Pongsunk et al. (15).
Selection of mimotopes by panning. A 12-mer random peptide library (from New England BioLabs) was used in this study. Two independent affinity selections were carried out with MAb ATVi and PAb PTS, respectively. Microtiter plate wells were separately coated with these antibodies (100 µg/ml for MAb ATVi and a 1:1,000 dilution for PAb PTS in 0.1 M NaHCO3 [pH 8.6]) overnight at 4°C. Nonspecific binding was blocked by incubating with 200 µl of blocking buffer (0.1 M NaHCO3 [pH 8.6], 5-mg/ml bovine serum albumin [BSA], 0.02% NaN3) in each well for 1 h, and then the wells were washed six times with 110 µl of TBS (50 mM Tris-HCl [pH 7.5], 150 mM NaCl). An aliquot (10 µl; 1.5 x1011 PFU) of phage solution was added to each coated well. The mixtures were incubated at 37°C for 1 h, and the wells were washed extensively 10 times (5-min interval) with TBST (TBS plus 0.1% [vol/vol] Tween 20). Bound phage was eluted with 100 µl of glycine-HCl (0.2 M [pH 2.2], 1-mg/ml BSA) by rocking gently for 7 to 8 min and neutralized with 1 M Tris-HCl (15 µl [pH 9.1]) to pH 7 immediately. The output PFU was determined by titrating the eluate (10 µl), while the remaining eluate was amplified in E. coli strain ER2738 at 37°C for 5 h. The panning procedure described above was repeated for another three rounds, but the Tween concentration in the washing steps was raised to 0.5% (vol/vol). After four rounds of selection, individual plaques were picked and used to infect E. coli ER2738 cells for amplification. Streptavidin and BSA were used as positive and negative controls, respectively.
Preparation, amplification, and titration of the selected phages. The selected phage clones were amplified to a high titer and purified twice by precipitation with 20% (wt/vol) polyethylene glycol 8000 (PEG 8000)-2.5 M NaCl according to the method described by Wang et al. (23). The phage titration method was adapted from Sambrook et al. (17).
Plaque amplification. Individual blue plaques from the third and fourth rounds of panning were randomly picked from Luria-Bertani (LB) agar plates (used in output titration) and used to infect E. coli ER2738 cells. The culture was grown in LB broth supplemented with tetracycline (20 µg/ml) at 37°C for 4.5 to 5 h before being centrifuged at 15,000 x g for 30 s. The supernatant was transferred to a fresh tube and respun as described above. The upper 80% of phage-containing supernatant was collected and stored in 4°C.
Phage ssDNA extraction. Phage single-stranded DNA (ssDNA) was extracted as follows. Selected amplified phage (500 µl) from individual clones was transferred to a fresh microcentrifuge tube. PEG-NaCl (200 µl) was added and incubated at room temperature for 10 min. After spinning at 15,000 x g for 10 min, the supernatant was discarded, and the pellet was suspended thoroughly in 100 µl of iodide buffer (10 mM Tris-HCl [pH 8.0], 1 mM EDTA, 4 M NaI). Then 250 µl of ethanol was added. The mixtures were incubated for 10 min at room temperature. The mixtures were then spun at 15,000 x g for 10 min, and the supernatant was discarded. The pellet was washed with 70% ethanol, dried, and suspended in 30 µl of TE buffer (10 mM Tris-HCl [pH 8.0], 1 mM EDTA).
DNA sequencing. The ssDNA (10 µl) was sequenced using the BigDye Terminator Cycle Sequencing Ready Reaction kit and an automated DNA sequencer (ABI PRISM 377'; Perkin-Elmer). The primer used was 5'-CCCTCATAGTTAGCGTAACG-3'.
Sandwich ELISA. Sandwich enzyme-linked immunosorbent assay (ELISA) to determine the ability of the phages to bind to MAb was performed as follows. Microtiter plates (Nunc, Inter Med, Roskilde, Denmark) were coated with 5.0 µg per well of unpurified tissue culture supernatant proteins containing MAb ATVi and blocked with TBS-0.5% BSA for 1 to 2 h at 4°C. Various concentrations of the phages (100 µl) were added to wells and incubated for 2 h at room temperature. Plates were washed with TBS-0.5% Tween 20 and HRP-conjugated anti-M13 antibody (1:5,000 in blocking buffer) was added. Following an incubation for 1 h, the plates were washed and substrate ABTS [2, 2'-azino-bis(3-ethylbenz-thiazoline-6-sulfonic-acid); Sigma] was added. The A414 was measured with an EL-320 microplate reader (Titertek Multiskan II; Flow Labs, Mt. Waverley, Victoria, Australia).
Indirect ELISA. Microtiter plates (Nunc, Inter Med) were directly coated with purified phage and ViCPS antigen (from Typhim Vi, Pasteur Mérieux Connaught, France) at 4°C for 18 h. Plates were blocked with 1% BSA. Primary antibodies (MAb ATVi) were added and the mixture was incubated for 1 to 2 h at 4°C. The plates were washed and incubated with HRP-conjugated antimouse antibody for 2 h, and the rest of the steps were the same as those described above for the sandwich ELISA.
CB-ELISA. Checkerboard ELISA (CB-ELISA) was performed by coating microtiter wells with various concentrations of MAb ATVi at 5 to 20 µg per well for 18 h at 4°C and then blocked with 0.5% BSA. Various concentrations of phage (dilution from 1010 PFU to 107 PFU) were then incubated with MAb for 2 h at 4°C. Phages bound to antibodies were detected with HRP-conjugated anti-M13 antibody as described above.
Competitive ELISA. Microtiter wells were coated with MAb ATVi and blocked as described above. Various concentrations of Vi polysaccharide (0 to 10,000 ng/ml in phosphate-buffered saline [PBS]) were mixed with equal volumes of purified phage solution (diluted 1:100 in PBS). The mixtures were added to MAb ATVi-coated microtiter wells (100 µl/well) and incubated at 37°C for 1 h. After the wells were washed six times with PBS-Tween (200 µl/well), the amounts of bound recombinant phage were determined with anti-M13 antibody-HRP conjugate as described above.
| RESULTS |
|---|
|
|
|---|
|
The most consensus sequences screened from the fourth round of panning were TSHHDSHGLHRV (55%), followed by TSHHDSHGVHRV (10%), ENHSPVNIAHKL (10%), and DNHSPVNIAHKL (10%). Another two additional sequences, which were related to the major consensus sequence TSHHDSHGLHRV, also appeared in the fourth round of panning. The peptide sequences TSHHDSHDLHRV and TSHHDYHGLHRV were almost identical with TSHHDSHGLHRV (Table 1).
In summary, seven classes of phage clones were found in the fourth round of panning. We grouped them into two populations. The first four classes were grouped into the major population (that composed approximately 75% of the phages screened); the latter three classes were grouped into the minor population (25%). Within each population, the sequence of each clone was almost identical (different by only 1 residue amino acid, which is underlined). However, two very different sequences were seen in these two populations of phage. The 12-amino-acid consensus sequence displayed by the major population of phage was TSHHDSHGLHRV, and that displayed by the minor population of phage was ENHSPVNIAHKL.
Sequence analysis of phage clones selected from panning with pooled patient sera. Ten and 18 individual clones were randomly selected from third and fourth rounds of panning, respectively. The deduced amino acid sequences of the selected mimotopes are presented in Table 2.
|
There were three seemingly unrelated peptide sequences (NP3.05, NP3.18, and NP3.15) found in third round phage pools that shared only 1 to 3 amino acid residues with ENHSPVNIAHKL (Table 2). Phage bearing the sequence TNHLGLQSSHRF (NP3.13) had 4 amino acids in common with the peptide sequence displayed by the fourth round phage clone in the major population, TSHHDSHGLHRV (89% of the phages screened). However, only 1 out of 10 phage clones screened in the third round carried TNHLGLQSSHRF.
Surprisingly, only two populations of phage clones bearing the predominant sequence motifs were observed in the fourth round of PAb-selected phage pool. Within each population, the sequences of each clone were identical, but two very different sequences were seen in these two populations of phage. The 12-amino-acid sequence displayed by the major population of phage was TSHHDSHGLHRV, which was present in 89% of the phage clones screened. The 12-amino-acid sequence displayed by the minor population of phage was ENHSPVNIAHKL. The frequency of phage carrying this peptide in fourth round of panning was reduced to 11% as compared to the third round of panning (30%).
Analysis of binding to MAb ATVi by two different type of phage clones. Two different groups of MAb ATVi-selected phage clones (NM4.04 and NM4.13) were compared in a sandwich ELISA to determine their relative avidities for binding to the selecting MAb used in panning. Phages NM4.04 and NM4.13 represent the two major populations of phage clones that carried the consensus peptide sequences of TSHHDSHGLHRV and ENHSPVNIAHKL, respectively. The results are shown in Fig. 1. The binding of MAb ATVi by NM4.04 was considerably greater than that by NM4.13. Levels of binding by negative controls (BSA with no antigen or no conjugate) were all significantly lower.
|
|
|
|
|
| DISCUSSION |
|---|
|
|
|---|
Selection using PAb sera generated a greater number of different 12-mer sequence motifs than those obtained with the MAb. With MAb ATVi screening, three different groups of sequences were identified, while the PAb screening generated five different groups of 12-mer amino acid sequences. This is not surprising, because pooled typhoid fever patient sera would most likely contain many subpopulations of antibodies directed toward various S. enterica serovar Typhi epitopes (10, 11). What is surprising is the fact that among the different sequence motifs selected by two different approaches, there are at least two common motifs identified from both pannings. To our knowledge, this is the first example of selection of immunodominant mimotopes of a carbohydrate antigen from phage display peptide library by using patient sera that are also recognized by a known MAb.
The other interesting observation is the different dominating motifs isolated from different rounds of the panning process. From the third round of panning, the common motif isolated with both patient sera and MAb was the 12-mer peptide ENHSPVNIAHKL (termed mimotope Vi12B), representing 20% clones for the MAb selection and 30% clones from patient sera. However, from the fourth round of panning, a new common motif was identified that carries the sequence TSHHDSHGLHRV (mimotope Vi12A). We also found out that epitope Vi12A appeared to be the most common sequence obtained with both screenings in the fourth round of panning. The same clone was isolated 11 times (55%) in the MAb panning, whereas in the PAb panning, it was easily the most common sequence obtained, found in 89% of the phages selected. Mimotope Vi12B appeared to be the second highest frequency obtained (10% with MAb panning and 11% with PAb panning, respectively). Although these two sequence motifs were different, there are considerable similarities among them: both contain polar, acidic, and hydrophilic residues.
Peptides that mimic carbohydrate epitopes have been isolated previously by using phage display libraries. Peptides that bind the lectin concanavalin A (ConA) have been reported (9). It was demonstrated that peptides containing the consensus sequence (YPY) bind ConA with an affinity comparable to that of the natural ligand (methyl-
-D-mannopyranoside). Phage and synthetic peptides with the motif blocked the binding of ConA to its carbohydrate ligand. Hoess et al. identified a peptide motif (PWLY) that mimics the Ley carbohydrate antigen on the surface of tumor cells and is capable of blocking the binding of antibody to tumor cells and to purified carbohydrate (7).
The peptides identified by both groups, YPY and PWLY, are similar in that they both possess aromatic residues as well as hydrophobic residues. The presence of aromatic residues is characteristically seen in peptides mimicking carbohydrates (7, 9, 14, 19, 26). However, none of the mimotope peptides identified in this study bears an aromatic residue. Instead, highly charged residues, both acidic and basic, were found in both of our mimotope peptides. The presence of acidic residues probably reflects the presence of sialic acid in the original carbohydrate epitope.
The specificity and relative binding activity of the selected mimotope phage clones were further characterized with a series of ELISAs. To confirm that the sequence obtained from the phage library is specifically bound to the antibody, two different ELISAs (indirect and sandwich) were carried out to show that MAb ATVi bound to selected phage clones, but not to nonrelated clones, and that the binding was maintained regardless of whether the plate was coated first with MAb or phage. It was also revealed that binding with mimotope Vi12A (TSHHDSHGLHRV) was considerably better than with Vil2B (ENHSPVNIAHKL). It is interesting to note that mimotope Vil2A is the most abundant clone selected from the fourth round of panning. Therefore, there seems to be a correlation between the abundance of the clones represented after the fourth panning and its relative avidity. To confirm that the mimotopes interact with the same site (the paratope) with the MAb as with the original carbohydrate antigen, a competition ELISA was carried out that allows direct competition between the mimotope and ViCPS. The results from this analysis showed that the binding of MAb ATVi to phage-displayed mimotope could be quantitatively blocked by Vi-containing bacteria as well as purified CPS. The inhibition by the purified ViCPS has an 50% inhibitory concentration (IC50) value of 0.32 µg/ml.
These data demonstrate that the selected phage-displayed peptide mimotope of the Vi capsular polysaccharide is antigenic and strongly suggest that the selected phage clones bound to the antigen-binding site of the MAb mimic in part the structural epitope of Vi antigen of S. enterica serovar Typhi. More studies are required to determine whether the peptide mimotope possesses both experimental and therapeutic utility. It may be that the incorporation of such a mimotope peptide into vaccine preparations enhances the efficacy of vaccines in inducing antibody responses to important carbohydrate epitopes (10).
In summary, we have demonstrated in this study that it is possible to identify peptide mimotopes of disease-related immunodominant carbohydrate epitopes from a phage display peptide library by using pooled patient sera. The discovery of two major common mimotope motifs from pannings using both pooled sera and the ViCPS-specific MAb not only corroborated the findings that these mimotopes are truly relevant, but also revealed an important fact that anti-ViCPS antibodies were highly represented in pooled patient sera. The data obtained provided fundamental information on the characteristics of Vi epitopes of S. enterica serovar Typhi. These observations have potentially important implications and applications for the development of peptide-base diagnostic tests and peptide vaccines and may also provide a better understanding of the pathogenesis of typhoid fever.
| ACKNOWLEDGMENTS |
|---|
The work described in this study was funded by the grants from the Wellcome Trust Fund and IRPA grants 06-02-03-0625 from the Ministry of Science, Technology and Environment, Malaysia. We also thank the University of Malaya for providing financial assistance (Vot F0053/2001B) to the project.
| FOOTNOTES |
|---|
| REFERENCES |
|---|
|
|
|---|
-amylase inhibitor from Streptomyces tendae 4158. Eur. J. Biochem. 141:505-512.[Medline]
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Antimicrob. Agents Chemother. | Clin. Microbiol. Rev. | Infect. Immun. |
|---|---|---|
| J. Clin. Microbiol. | J. Virol. | ALL ASM JOURNALS |